Seeing anomalies and other oddities is common enough with beekeeping in Honduras, because of both the Africanized bees present here and also the population of different native stingless bees. One these experiences for me involved a hive with two colonies.
When you read about bees you often come across information and references to double colony hives. Normally this is where the beekeeper will set up two distinct hives side by side, both with their own queen but who share a common stack of supers. Mine was a bit different?being that it formed naturally and with two distinct types of bees.
?Musings About a Double Colony Hive?http://musingsonbeekeeping.blogspot.com/2016/02/musings-about-double-colony-hive.html