...why that's a pretty green :lau: Looks like you ran her through a carwash. :-D
I have all the stuff but I've never marked a queen. I want my eyes trained to see her without any help. That being said, I understand it's best to take the marker and mark some other things before you mark the queen. It's said that some markers will dispense a lot of color with the first marking of the day. Others have said what you have saw - the bees will clean it up. Good luck.