Seconded that I think you had a virgin. We had a nuc that by rights should have had a queen in it, assumed she didn't make it back from her mating flight, so added a frame of eggs. Inspection on the weekend showed eggs and young larvae, so we obviously just missed a virgin.
Question about the queen cups (sorry to hijack the thread) - worker bees make it, but why would a queen lay an egg in one? Does she know she isn't doing well/dying/underperforming so she lays an egg in there to be raised as a queen? Or do the bees take an eggs from a normal cell and transport it into the queen cup?