I'm afraid she is damaged goods now and will likely be killed. If she was laying prior to your attempt to mark her, the bees will make a new queen to replace her. Given your location, it's questionable that a replacement can be developed, mated and laying in time to save your hive, though, because cold weather will hit. You may be able to buy a new queen in time. Maybe some others will be able to better advise you, but those are my thoughts. I'd suggest you read everything on Michael Bush's website for more information on all the subjects covered here.